Variant Explorer
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Load data
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Submit
Load Groups
Upload groups file
Save Groups
Save groups to file:
Save
Samples
Select samples from the table to assign them to a group.
Set Groups
Assign samples to group:
Set Group
Variant Quality Filters
Upload filters
Save filters to file:
Save
Variants per sample
Samples per variant
Plots
Features to plot:
variants per sample
genes per sample
Filter to:
SNPs
indels
heterozygous sites
homozygous sites
Highlight sample: (group,variants,genes)
Zoom to min:
Zoom to max:
Features to plot:
samples per variant
samples per gene
variants per gene
Filter to:
SNPs
indels
heterozygous sites
homozygous sites
Highlight gene: ([alias],variants,samples)
Zoom to min:
Zoom to max:
Search variants by gene or sample
select one
gene
sample
Variant Table
Show all variants
Save variants to file:
Download
Select columns to display:
chrom
pos
type
sample
var_count
gene
Select a phenotype
Samples
Images
Annotation Heatmap
Choose annotation mode for plot:
gene
Pfam
Panther
KOG
ec
KO
GO
Adjust plot height